Report for 6634.m00105

 > 6634.m00105, length: 569, copies: 1 

SDVWTNLLRTPLYAATSGIVLITTRQDTVAREIGVEEPHHIDLMSPAVGWELLWKSINIEDEKEVQNLRDIGIEI

VQKCGGLPLAIKVIARVLASKDKTENEWKKILANYVWSMDKLPKEIRGALYLSYDDLPQHLKQCFLYCIVYPEDC

TIRRYDLIRLWVAEGFVEVHKDQLLEDTAEENYYELISRNLLQPVDTSFDQSKCKMHDLLRQLACHLSREECYIG

DPTSLVDNNMCKLRRILAITEKDMVVIPSMGKEEIKLRTFRTQPNPLGIEKTFFMRFTYLRVLDLTDLLVEEIPD

CVGYLIHLRLLDLGGTNISCLPNSIGALKNLQMLNLQWCKSLYSLPSTVTRLSNLKRLGLDFTPINQVPRGIGRL

EFLNDLEGFPVGGGSDNTKMQDGWNLQELSHLSQLRRLDLNKLERATPRSSTDALLLTDKKHLKSLHLCCTEPTN

EAYSEEAISNVEMIFEQLSPPRNLEDLMIVLFVGRRFPTWLSTSLLSSLAYLKLKDCKSSVHLPPIGQLPNLKYL

RIKGASAITKIGPEFVGCWEGNLRSTEAVAFPKLKLLAIEDMPN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	1	172	2.8e-09
NB-ARC [Pfam fs]	2	172	1.2e-46
LRR [Pfam ls]	307	329	0.045

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	284	306	2.9
LRR [sensitive, ls]	284	306	32
LRR [sensitive, ls]	307	329	0.0041
LRR [sensitive, ls]	307	329	0.045
LRR [sensitive, ls]	330	353	0.99
LRR [sensitive, ls]	330	353	11
LRR [sensitive, ls]	354	376	1.4
LRR [sensitive, ls]	354	376	15
LRR [sensitive, ls]	521	545	1.6
LRR [sensitive, ls]	521	545	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	2	566	1e-37
I2 [L. esculentum]	4	567	1e-58
Pib [Oryza sativa].	11	356	3e-29
Xa1 [Oryza sativa]	15	534	6e-30
RPS2 [A. thaliana]	20	568	2e-32
Pi-ta [Oryza sativa]	20	379	2e-22
Mla1 [Hordeum vulgare].	52	478	5e-39

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6634.m00105

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)