Report for 6650.m00158

 > 6650.m00158, length: 485, copies: 1 

MSLLTAMFLSLAITTTTTTVLLLLTPAAATALQVMMTQLRRPSGSGGCFPGEMDALLEFKEGIADDTTGLLASWR

PEDGQDCCRWTGVRCSDRTGHIVKLNLGSRESINPFAMRLFGEISHSLLSLHHLQHLDLSHNSLEGPTGDMPEFL

GSLKSLRYLNLSGIPFHGLVPPHLGNLSNLRVLDLSYTANSYSPDISWVTRLRRLRYLNMGDVNLSMADYRTSAS

RFARTYTRRNVYSVLRRRQRAGTPSRNVPEVWGATSRSSPKHAAELIGKFDKEKSDLVRSIGFGGLLELPQINGI

DRRFTRWLLSRVNCDSRTLRVGNNLDVELSPRNVHRVLGIPFEGMEVCPMPDNSKDEKDSFVQHYIGAPGFEASA

LKGAEEVIRRTFPDGMNSWFRTAFVVWIVGTFLAPKTSHKALLRKSKYVRRQQWSLWASSSEKLFQRRTSLLFKK

AWRVAFFDLCDKLYDKTYVLVAVSWARFTRKAAAN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	128	154	0.0026
LRR [Pfam ls]	155	178	3.6

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	128	154	0.00023
LRR [sensitive, ls]	128	154	0.0026
LRR [sensitive, ls]	155	178	0.32
LRR [sensitive, ls]	155	178	3.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	46	218	5e-13
FLS2 [A.thaliana]	49	185	1e-13
CLV2 [A. thaliana]	50	186	3e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out

Report for 6650.m00158

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)