Report for 6650.m00161

 > 6650.m00161, length: 912, copies: 1 

MSEAVILLVVKKIGVALGNEAINQATSYFQKYVTQLTELQGSMGRIKRELRLMHEFLSRMDIRNRNNKIYEIWVE

DVRMLAHQIEDIVDDYLHLVSHKDKHDDTGWTTYLKKGFKRMKGPNALLSLNRIAPSVKEAEANLVHLFQAKERW

VRMVADETSGESSCYIVEASRHLASISCSLSEEDLVGVDENRKRLREWLAGDELEREVIVLHGMGGLGKTTLAAN

VYRNEREKFECHAWVSISQTYSIKNILKCLITELFRNAKQNPPVNLGDMKAEGLQDELKAFLRDRKYLVILDDVW

APEAISNLFGALVSNLRGSRVLVTTRIDEVTHLAFPNKRIRLEPLSQNDSWELFYKAAFPREKKLECPTEVTQLA

YQIASKCKGVPLAIVSVGRLLFVRDKTEEEFRRIHNQLDWELINNPSMEHTTIFLQAKKLVRWWIAEGFVEKRGG

STMEEVAEGYLKELVHMNMLQLVERNSFGRIKAFRMHDIVHELAVDLCRRECFGVSYSCENKRFEFLEENDERRM

VIHRLDKDINQVISSECRLRSFIALDKAMPSSTLLPLLSEKCRYMSVLELSGLPIDNVPDAIGDLFNLRHLGLWD

SNVKLLPNSIEKLSNLLTLDLCTSEIHELPRGIIKLKKLRHLFAEKANDRSGRQLRCRTGVCIPSGLENLRELQT

LQALQAQDEPLSWLGELRQMRSIKIWDVKGSCCECLCASLRHMEFLSYLSIAASDENDILNLSSLNPLPPNLEKL

RLRGRLAQANMLLGAAGGQNHLYSIHLSWSQLVDDPLPSLSRWSNLTDLLLNRAYIGDELVFHHGWFPALKELYI

GDMPRLKRLEIQQGSMASLQQLYLVNLSSMMEVPLGIEFLMSTLKSLGFAEITRQFLAALRQCSRINCGIQWWYT

LLGEDRTQEASI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	172	419	9.9e-57
NB-ARC [Pfam ls]	172	450	1.1e-52

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	569	591	7.1
LRR [sensitive, ls]	569	591	78
LRR [sensitive, ls]	592	614	0.57
LRR [sensitive, ls]	592	614	6.2
LRR [sensitive, ls]	615	637	1.4
LRR [sensitive, ls]	615	637	15
LRR [sensitive, ls]	771	797	3.4
LRR [sensitive, ls]	771	797	37

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	22	886	3e-98
Pib [Oryza sativa].	52	355	1e-13
Mla1 [Hordeum vulgare].	71	721	6e-44
Pi-ta [Oryza sativa]	73	620	5e-29
L6 [L. usitatissimum]	172	501	5e-16
M [L. usitatissimum]	172	501	5e-15
Pib [Oryza sativa].	182	867	1e-35
I2 [L. esculentum]	183	646	2e-38
RPS2 [A. thaliana]	183	859	9e-21
Xa1 [Oryza sativa]	208	644	4e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6650.m00161

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)