Report for 6652.m00177

 > 6652.m00177, length: 1452, copies: 1 

MGLAGATVEAAIGWLVESILGSFFTEQMEAWIRGVELTEGVKKLEFEMRNVEMVLATAEGRRIDKKPLIQSLDVL

RELLYDAEDVMDELDYYRLQQQIEKGEGCSAAAANYPEASYASSSTPFSPYQLLHSARSQITVWASYCRKRKQGE

GDTTHCTMLPLEIRLDISKRINGIVNDLQKAGNSVRGILLPGVSHPALTSNQRQSKIRNTRLTTSVPIELKVYGR

DADRDRIIEILLNEESSDLRVLPIVGIGGIGKTTLTRFIYSDRRIIDHFDLRIWICVSTYFNEVDITREILEHIF

EDKQDKQEFKDVSNFNVLQEILLKNIRDKRFLLVLDDMWKEKDMSGWDKLLAPLKHSQVTGCMVLATTRKNSVAE

MIGTVNAFQISGLDEKEFWQFFKACAFGKENYEGDPSLQSIGRQIAKALKGCPLAARSVGALLNRNVSYEHWRTI

RDKWKSLQIKDDDFIPILKLSYDYLPSHLQRCFSYCSLFPEDHPFSAATLVQVDRHYVMHDLMHDLAQQVSAKEC

YTVRGLQSSTIRQGIRHLSIITTGDDNDKNTNFPTEKYEILQKIRPLQKLRSLMLFGSSSVYLLKSIQTVCKEAK

CLRLLRVCVLNADISAIHTFLNPHHLRYLEFIRVSETKDMLVYGDYKDAAFPRALTSFYHLQVLDVGFSGNISVP

AAMNNLVKLRHLIADAKVHFSIGGVGNMISLQKLKFKVQNISGFDIRQLQSMNKLVTLVISHLENVKTKDEANGA

RLIDKEYLKKLFLSWSVGSMSLEPERTKDVLEGLQPHHNLKALCIAGYTGPTSPTWLSSNLSVTSLQTIHLVNCR

EWRILGSLEMLPVLRELKLVKMWNLVELSIPSLEKLILIELPKLEKCFGTYGTELTSRLRVLKIKDCPQLNEFTP

FQSFSSFRTEQKSWFPSLNKLTIGCCPHISKWEILPLREMQSLKELELVHLHAVKELLVLPLEKLVLIKMASLEY

CSGLTSPSLQISTSLGDRNESLSGLHDLTIHDCPRLVVSHPLPFSAQMRRFSISGIPTLPTMELTYDLKIKSEEL

VMLDDKIISFHNFARIRSFCLVDCPNLVSLSTEGERVLLGYTSLERLRIQRCPKLMPLLVMSDKVDVALLPPSLE

NLEIDMSPELSAAWDLKLQEHGQIIPLQPHPSLEELDISNLTDKDQSRLLQLFPTITALYIWQSPELTSLQLGYS

KALRELKIIDCGSLASIEGFGSLTNLRSLAVSNSPGVPAFLELLSHQQLASAEILSRLETLQVGDGSVLTVPLCR

RLASLRRLSFWSWDSRRGETMIDLTEEQERALQLLASLHRLDFWHLPNLRSLPAGLRRLASLEWLDVEDCPGVAR

LPEMGLPPSLTRLHSADCIQINKILHIVVVCAALASFSTDILLEPMYTVIWPYNKDHYIYAVNLGELISKLLALV

IVMVFETIVRVDGYVGRHVQTKASVID

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	206	495	3.9e-65
NB-ARC [Pfam ls]	206	519	1.3e-63

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	660	682	3.5
LRR [sensitive, ls]	660	682	39
LRR [sensitive, ls]	883	905	1.1
LRR [sensitive, ls]	883	905	12
LRR [sensitive, ls]	917	941	7.4
LRR [sensitive, ls]	917	941	81
LRR [sensitive, ls]	1202	1224	1.9
LRR [sensitive, ls]	1202	1224	21
LRR [sensitive, ls]	1312	1335	1.3
LRR [sensitive, ls]	1312	1335	14
LRR [sensitive, ls]	1336	1357	1.8
LRR [sensitive, ls]	1336	1357	20

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa1 [Oryza sativa]	8	101	8e-17
I2 [L. esculentum]	41	1375	2e-91
Xa1 [Oryza sativa]	144	1364	1e-161
Pi-ta [Oryza sativa]	201	692	3e-15
Pib [Oryza sativa].	210	695	7e-32
RPS2 [A. thaliana]	216	957	1e-28
RPM1 [A. thaliana]	219	503	2e-24
Mla1 [Hordeum vulgare].	222	773	1e-17
N [N. glutinosa]	233	520	2e-11
Xa1 [Oryza sativa]	604	1368	1e-35

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6652.m00177

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)