Report for 6654.m00170

 > 6654.m00170, length: 1251, copies: 1 

MELATAAMGSLLSRLAELLSLEENQLQEGVRNRVRQFSRGLKTMDTTLRLVANIPRDHQLDEQVRLWAHDVRMLS

YDLEDVVDTVLISLRVGSDPEQADLEMLMRLVAKMNDQLFNGSVEYGQMFSDAVAKQRLRYVATKHGAGNYTAVG

HPTHDPYTKAMSTKLVGIDGPRDEVIEMLSMGDQSKLKIVSVFGFGGLGKTTLVKVIYDKLEPGFQCGAFVTVSR

INPNMNRVFRDILYYLDKKKFTNSYTLMLDEKQLINELQEFLQNKRYFIVIDGLWDINSWNKIRSALPDDNCGSK

VVTTSGISNVARDVGDVYNLQPLSHGNSKKLLSTRLYVDESKCLESTSAEASERFLEKCGGVPLGVIAIAGLLAS

NPEDNWSEMYNSFCLGKGINDDVENIRRILSFCYYHLPSHLKTCLLYISIFREDYEINKCLVIWKWIAEGFIHGD

QQIGLFELAEGYFVELINRSMIQPVEAQGTGHVIGCRVHDMVLDLVRSLSSEENFVTVLSEDGDEQQKFPLTNAN

RLSLQSRVVEKRHPQLANVGMEQVRSFVAILSDIHVVSPSFQVLRVLALEDCKFIEGYTSNGLEHLGKLLHLRYL

GLTRTRGFHRLPEEIGQDLKFLQTLDLYETDLEEMPFTVGLLTQLLCLRVDVGTRVPAGLIGNLTSLQELWIYPA

MKDFSMGFATAMQFVKDLGKLSELRVLKTRIHGWDQSMEIALVESLHNFHKIQLLELHGKSYLGKGVTWETGFVS

SQHLRYLSLACMQLTRLPAWMNSSLLPNLSYLVVNVQFWQEQDMETLGRMPELCSLELQSCNIRVVNIKHTCGDI

GYFQKLRSLISYAILIRFDLYKLSSSSVRIDEPTTMPTLEYLQFMVHVHFLKDANLGFDKLVSENLPSLQRVKAI

INCSDARLTEVEEAEEALTDAANVHPNHPTLKLMRYNEHRMVSSDQAQQVYAITPINSTSLDVTQFGGKNRVIQA

ISSSLGTMGCLITKLDMLLDQGCKLPKGVKNRILLLKGDLEEVGTYLEDLSKVDDPHLMAKCWMKEVRELSYDIE

DYTYNIEDKIKLAGHVHLNTKTRFVCRINHLKISGVPRRLKWHQQIGSMISEFRIYVQEAIERYERYDLHSCTYR

QRYASVSYVLSTPYEQTADLVIDGRTSKFIKWLANDGDPKLKMVSIVGCGGIGKTTLAKLFYNKFGGRFDCRAFI

QVPQKPNMKRLFCDIISQVQQNNPHEDCKELELIDNIRRHLQDKRCCYFLK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	148	452	2.4e-38
NB-ARC [Pfam fs]	165	305	2.2e-21
NB-ARC [Pfam fs]	357	452	4.5e-19
LRR [Pfam ls]	621	643	5.2
NB-ARC [Pfam fs]	1155	1245	1.1e-12

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	596	620	0.81
LRR [sensitive, ls]	596	620	8.9
LRR [sensitive, ls]	621	643	0.48
LRR [sensitive, ls]	621	643	5.2
LRR [sensitive, ls]	753	774	0.53
LRR [sensitive, ls]	753	774	5.8
LRR [sensitive, ls]	802	832	3.9
LRR [sensitive, ls]	802	832	42

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	1	931	1e-126
Pi-ta [Oryza sativa]	8	626	9e-59
Pib [Oryza sativa].	116	645	3e-51
RPM1 [A. thaliana]	165	803	2e-48
RPS2 [A. thaliana]	165	900	7e-23
I2 [L. esculentum]	173	816	2e-33
Xa1 [Oryza sativa]	174	810	2e-23
Pi-ta [Oryza sativa]	975	1250	2e-33
Mla1 [Hordeum vulgare].	981	1245	2e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6654.m00170

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)