Report for 6654.m00171

 > 6654.m00171, length: 1183, copies: 1 

MAKRYLIIIDNLSAASVWDILNQAFPECTQRSRIITTTRIISVALNCCLHRSEYIFEMKPLGDDCSRKLFFKGLF

GSERDCPHRFKEASNKIVQICGGLPLAIIIIASLLASQPVVSMRLWIHICNSLRPDLWTDSTSDGMKQVLNLCYN

NLPHYLKNCMLYLNKYPEGYKISKDALVKAWVAEGFINVTKDLGMEKVAARYFDELIGRRFIQPIEINYNDEVSS

CTVHDLVRDLIAQKSADENFIVIIDGYRKNVGLIDKVRRLSVQFFYSKYTKVPSNIKRSQVRSLTFFGLLRCMPS

ITDFKLIRVLNLQLVGHLGENTLDLTGISVLFQLKYLKIVCDICIELPNQMRGLQLLETMDMKTKLTAVPWDVFH

LPGLLHLYLLLEPNLLDWIGQMKSTITLDASSNSSQGNLNNLQDICLSCCALPSEHLQRNMETLGSLLGAVSNLK

TLSIVSSSNQNVDMVSGTSDATVAWDFLTPPRFLQRFEWLLHDCIFSKIPEWIGELDNLCILNIAVRELVKNGIN

ILRGLPALTSLSLNVHTTSIEKVIFDKGGFSVLKYLEFRCSAPWLKFESDALPNLRKLKRFSEKIRGGGNVEFPL

TSAISNHPGNPRINFQLVDGVFYGDEDEEHATPTMGLEGRCWETVSGDSDGVGRCPQPNHVLENVLLESILQFLT

TARDRNMASLVCRYWYHAEAETRQELFIRNCYAVSPNRVIERFRGLRSITLKGRPCFADSTLVPKGWGAYASPWV

AALGPAYPHLKCIFLKRMTDTVDKQVDWISMFPKPSTSLESLLFSCVDTPCNFESLEALVARSPGLCQLGVNRHV

TVEQLCCLMAIAPNLTHLGTGVFRSKTGYPAGEAPPSVSELATYFAACRSLHSLSGLQDANPDYLPAIYPVCANL

TSLNISSATLTGQQLAPIIRSCGNLRTFCVRDSIGDDGLSAIAETCLDLQDLRVYRLLRGSEHHLSVSDVGLETI

SKGCQKLKTLTYYCGSMTNAAMVIMSSNCPNLEVFRLSILKTYLPDRITGEPMDEGFGAIVMNCKKLSRLSTSGL

VTDKAFAYIGQYGKSIKTLSVAFSGNTDMSLRYVFEGCTRLQKLEVRECPFGDEGLLSGLSHFWNMRFLWMSSCR

VTMTGCRYVAQQMPNLVAEVISGHSGNEDVTADNVDHLYLYRSLAGPRDDAPSFVKIL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	1	192	2.7e-05
NB-ARC [Pfam fs]	3	192	2.7e-26

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	2	562	2e-30
Xa1 [Oryza sativa]	2	382	3e-18
I2 [L. esculentum]	3	600	4e-22
RPS2 [A. thaliana]	3	243	1e-10
Mla1 [Hordeum vulgare].	3	629	1e-64
Pib [Oryza sativa].	3	425	4e-34
Pi-ta [Oryza sativa]	3	442	7e-93
Pi-ta [Oryza sativa]	492	622	2e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	95	117	in -> out

Report for 6654.m00171

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)