Report for 6657.m00180

 > 6657.m00180, length: 250, copies: 1 

MGAHSSAAAAALFTGFLALATLVSCNTEGDILYAQRLAWKDPFNVLQSWDPTLVNPCTWFHVTCNNNNSVVRVDL

GLAGLSGPLIPQLGGLSYLQYLELYGNELNGSIPAALGNLSSLVSLDLQGNLLTGAIPDSLGAISTLRNLRLYGN

NLTGTIPQSLGSLTSLVKLELQKNSLSGTIPASLGNIKTLELLRLNKNSLTGTVPMEVLSLVLVGNLTELNVAGN

NLDGTVGSTGWRVTTIIQDNLKTSG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	93	116	0.012
LRR [Pfam ls]	117	140	0.061
LRR [Pfam ls]	141	164	0.002
LRR [Pfam ls]	165	188	0.36
LRR [Pfam ls]	216	240	5.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	93	116	0.0011
LRR [sensitive, ls]	93	116	0.012
LRR [sensitive, ls]	117	140	0.0056
LRR [sensitive, ls]	117	140	0.061
LRR [sensitive, ls]	141	164	0.00019
LRR [sensitive, ls]	141	164	0.002
LRR [sensitive, ls]	165	188	0.033
LRR [sensitive, ls]	165	188	0.36
LRR [sensitive, ls]	189	213	0.63
LRR [sensitive, ls]	189	213	6.9
LRR [sensitive, ls]	216	240	0.48
LRR [sensitive, ls]	216	240	5.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	41	231	2e-26
FLS2 [A.thaliana]	44	231	7e-16
Xa21 [O. sativa]	52	225	3e-16
Xa21 [O. sativa]	57	244	4e-29
CLV2 [A. thaliana]	58	231	3e-15
FLS2 [A.thaliana]	60	231	1e-19
Xa21 [O. sativa]	60	250	9e-25
FLS2 [A.thaliana]	64	231	1e-19
Cf-9 [L. pimpinellifolium]	65	247	1e-12
Cf-9 [L. pimpinellifolium]	66	242	2e-14
FLS2 [A.thaliana]	66	231	4e-20
Xa21 [O. sativa]	66	246	8e-19
Cf-9 [L. pimpinellifolium]	67	234	7e-21
FLS2 [A.thaliana]	68	231	9e-27
FLS2 [A.thaliana]	69	241	3e-21
FLS2 [A.thaliana]	69	159	1e-11
CLV2 [A. thaliana]	70	233	4e-19
CLV2 [A. thaliana]	73	210	1e-10
FLS2 [A.thaliana]	73	249	4e-22
FLS2 [A.thaliana]	73	248	2e-16
FLS2 [A.thaliana]	74	248	4e-25
FLS2 [A.thaliana]	79	231	4e-18
Cf-9 [L. pimpinellifolium]	80	231	7e-12
FLS2 [A.thaliana]	80	231	2e-20
FLS2 [A.thaliana]	80	205	2e-18
FLS2 [A.thaliana]	88	235	1e-18
Cf-9 [L. pimpinellifolium]	94	231	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6657.m00180

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)