Report for 6658.m00162

 > 6658.m00162, length: 1184, copies: 1 

MAGLFASMAVKWAIDKLSSLLTPVRQTPVASSSSSSSSSQGLDDLRMLERTMRRIHATLMDAEEHWNIREESAKL

RLRELKELAYGAEDVVEEYEYEVNRCRLEAADRCASNCSKRKRHEVLQPNRGPTMAPAFGYQNKTVNDEQFAQFG

LVPVPHELVVRARELIQRFDEMKVYYKHFSMSDNDGERRIVPDIHSVRPTSYLVDKESIIGRELDKKTIIEKLMS

GHGNNAVSDYLSVLAIVGMGGLGKTTLAQLVYNDQTVHRSYDVCVWVYVSDHFDSTNLTKKIIVSITKESNNLSE

LVDLQDKLGQEIRGKRFLLVLDDVWNERKDCWETFCKPLSAARQCNILVTTRNVAVARLVQTMPHFTIDHLSPHE

SWTLFERTVAVHDNIIQGNLVDIAKKIVQKCDRLPLAIKTLGSMLRYESDESRWIDVLESELWDLDKAHNEILPA

LELSYKNMPMHLKLCFVSLCLFPKDYSLKKSEVISLWGLLDILQCDEWNNEDESGSQYFLFGRTGSRYYDELVQR

SFLQISFNSGIMHDLIHDLACHLSGNEFFRLEGDKPVEIPQNARFMSIIDYHTSVQFSASSHPLWAIIGLERDEV

TNLELLFSICKNLRVLALSDRNLHEALPRYISSMKLLRHLEGPWNAPSGIYPLINLHTFPHVYICRCGGSFNLRE

LKNLNKKKGKLRISGLGNLSHVQDAIEAQLMNKKHLQFLQLDFSEVECLHMPLQLGLNFTPKEVRYENLQYQYMQ

QPKYPIVPHNQILESLRPHEGLRRLAIYGYKCQSYPSWLGDASFSKLTNIVLYGTDKVTQQCVPTLGELPFLKYV

SIGRMYYMEHIGTEFCTRIPGNKGFPSLKTLEFSNMLHWSKWSGVDDGDFPCLSSLIISDCNRLSSLPSDRFSSL

HYLKLSNCNVIGVIPAGGTLRDLEIRVCNGLHTIRTQPALLIMWLYDCPKLGAVGTMPKLNKLDIQKCPNLTSVG

SLPELTTLNAEGNLADVMLFGQLDHLPLLHYLSIWYNTLMDNPTIPVLHNLKELDIHSCPGITKLPFLPSLLKLR

ICRCPDLDVIGSLPSLNTFHLWDPLLKDKVLCRLLNGIDHPWLNCISILCETMTNLSLEPKRLSSLRKILLSCAN

LQYCDGLSGLTFLEEIKIWRCPKLPIHSLLPRQLQSALDLRDAPASFIDDFDGDMWDFE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	193	498	2.3e-77
NB-ARC [Pfam ls]	193	498	6.4e-78
LRR [Pfam ls]	899	921	3.6
LRR [Pfam ls]	959	981	5.3
LRR [Pfam ls]	1025	1048	0.38

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	612	635	2.3
LRR [sensitive, ls]	612	635	25
LRR [sensitive, ls]	710	735	5.7
LRR [sensitive, ls]	710	735	63
LRR [sensitive, ls]	877	898	0.72
LRR [sensitive, ls]	877	898	7.9
LRR [sensitive, ls]	899	921	0.33
LRR [sensitive, ls]	899	921	3.6
LRR [sensitive, ls]	959	981	0.48
LRR [sensitive, ls]	959	981	5.3
LRR [sensitive, ls]	1025	1048	0.035
LRR [sensitive, ls]	1025	1048	0.38
LRR [sensitive, ls]	1115	1139	4
LRR [sensitive, ls]	1115	1139	44

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	45	1169	9e-97
Mla1 [Hordeum vulgare].	74	777	5e-35
RPM1 [A. thaliana]	81	907	8e-41
RPS2 [A. thaliana]	158	915	5e-27
L6 [L. usitatissimum]	163	472	1e-10
M [L. usitatissimum]	168	472	4e-11
N [N. glutinosa]	182	548	1e-10
Xa1 [Oryza sativa]	182	574	1e-49
Pib [Oryza sativa].	183	557	8e-20
Pi-ta [Oryza sativa]	209	603	4e-19

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6658.m00162

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)