Report for 6670.m00163

 > 6670.m00163, length: 1312, copies: 1 

MVVGPLLSMVKDKASSYLLEQYKVMEGMEEQHEILKRKLPAILDVIADAEEQAAKHREGVKAWLEALRKVAYQAN

DVFDEFKYEALRRKAKGHYKKLGSMDVIKLIPTHNRFAFRRRMGDKLIKIVNEMEVLIAEMNAFRFEFRPEPPIS

SMKWRKTDCKISNLSMNIAIRSRSEDKQKIINTLLAQVSNRDLTVLPIVGMGGMGKTTLVQLIYNDPEIQKHFQL

LLWVCVSDKFDVDLLAKGIVEAARKEKNENVMAKNSPQDALKEVLSGQRYLLVLDDVWNREASKWELLKSYLQHG

GSGSSVLTTTRDQAVAQVMAPAQKAYDLKRLNESFIEEIIKTSAFSSEQERPPELLKMVGDIAKRCSGSPLAATA

LGSTLRTKTTEKEWESVLSRSMICDEENGILPILKLSYNCLPSYMRQCFAFCAIFPKDYEIDVEMLIQLWMANGF

IPEQQGECPEIIGKRIFSELVSRSFFEDVKGIPFEFHHIKDSKITCKIHDLMHDVAQSSMGKECAAIATKLSKSE

DFPSSARHLFLSGYRAEAILNTSLEKGHPGIQTLICSSQKEETFICDRSVNEDLQNLSKYRSVRALKIWGRSFLK

PKYLHHLRYLDLSESKIKALPEDISILYHLQTLNLCRCYCLRGLPKGMRYLTTLRHLYLHGCSSLESMPPDLGRL

ICLQTLTCFVAGTCYGCSDLGELRQLDLGGQLELSQLENVTKADAKAANLRKKKKLTKLSLDWSPNHSKEAQNNH

KEVLEGLTPNEGLKVLRIHCCGSSTCPTWMNKLWYMVELQLIGCKNLEMLPPLWQLPALEVLFLEGLDGLNCLFN

SDEHTPFTFCKLKELTLSDMRNFMTWWDINEVQGEELVFPEVEKLFIEYCHRLTALPKASNAISKSSGRVSTVCR

SAFPALKEMKLCDLSVFQRWEAVNETPREEVTFPQLDKLTIRCCPELTTLPEAPKLSDLNIYKGSQQLSLVAASR

YITSMSSLNLDLSIDDTETALVAKQNSSELVYEKEKWNDNSPLELMDLDGCNLLFSHPSALALWACFVQLLDLTI

WCVDVLDYWPEKVFQGLVSLRKLQIRECRNLTGHTQAYEQSTPVRSELLPCLESLEISYCISFVEMPNLSASLKL

LEIMNCFGLKSIIFSQQHDRRLVSAESVTRPDRSSLIAGSSSGTNDHILPCLESLAIKRCDRLEVLHLPPSIKKL

EILKCENLQSLSGKLDAVRALIIRSCESLKSLESCLGELPSLEQLDLFDCKSLVSLPEGPQAYSSLRFLTIDSCS

GIELLPLSLQQRLDYLEEKKLDARYEGDNVTRLYVEL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	154	456	8e-70
NB-ARC [Pfam ls]	154	456	2.2e-70
LRR [Pfam ls]	606	628	1
LRR [Pfam ls]	629	652	7.9
LRR [Pfam ls]	653	676	0.13

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	606	628	0.032
LRR [sensitive, ls]	606	628	1
LRR [sensitive, ls]	629	652	0.25
LRR [sensitive, ls]	629	652	7.9
LRR [sensitive, ls]	653	676	0.0042
LRR [sensitive, ls]	653	676	0.13
LRR [sensitive, ls]	785	807	1.4
LRR [sensitive, ls]	785	807	44
LRR [sensitive, ls]	935	957	0.76
LRR [sensitive, ls]	935	957	24
LRR [sensitive, ls]	1101	1124	0.72
LRR [sensitive, ls]	1101	1124	23
LRR [sensitive, ls]	1176	1201	2.9
LRR [sensitive, ls]	1176	1201	91
LRR [sensitive, ls]	1217	1240	3.2
LRR [sensitive, ls]	1217	1240	99
LRR [sensitive, ls]	1241	1264	0.4
LRR [sensitive, ls]	1241	1264	13
LRR [sensitive, ls]	1265	1285	2.9
LRR [sensitive, ls]	1265	1285	92

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	2	701	2e-39
RPM1 [A. thaliana]	16	883	9e-48
I2 [L. esculentum]	35	1258	1e-106
Pi-ta [Oryza sativa]	63	633	4e-25
Pib [Oryza sativa].	165	873	2e-36
Xa1 [Oryza sativa]	170	1286	6e-78
M [L. usitatissimum]	175	453	2e-12
N [N. glutinosa]	185	961	1e-15
RPP5 [A. thaliana]	188	1130	2e-15
RPS2 [A. thaliana]	195	961	2e-31

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6670.m00163

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)