Report for 6670.m00167

 > 6670.m00167, length: 1315, copies: 1 

MVVGPLLSMVKDKASSYLLEQYKVMEGMEEQHEILKRKLPAILDVIADAEEQAAKHREGAKAWLEELRKVAYQAN

DVFDEFKYEALRRKAKAKGHYKKLGSIVVIKLIPTHNRILFRYRMGNKLRMILNAIEVLIAEMNAFRFKFRPEPP

MSSIKWRKTDSKISNLSMDIANKSRKKDKEEIVNRLLAQASNGDLTVIPIVGMGGMGKTTLAQLVYNDPEIQKHF

QLLLWLCVSDNFDVDSLAKRIVEAAPKEMNKKNDNGGAKKLPQDELKEVVSGQRYLLILDDVWNRDASKWEALKY

NLKHGGSGSSVLTTTRDQAVAQLMAPAQEVYDLKNLNESFIEEIIKRSAFNSEQERPPPELLEMVGDIAKKCSGS

PLAATALGSTLRTKTTKKEWDAILSRSTICDEENGILPILKLSYNCLPSYMRQCFSFCAIFPKDHEIDVEMLIQL

WMANGFIPEKQGECPEIIGKRIFSELVSRSFFQDVKGIPFEFHDIKCSKITCKIHDLMHDVAQSSMGKECATIAT

ELSKSDDFPYSARHLFFSGVIFLKKVYPGIQTLICSSQEELIRSSREISKYSSLRALKMGGDSFLKPKYLHHLRY

LDLSYSKIEALPEDISILYHLQTLNLSICDCLCQLPNGMKYMTALRHLYTHGCWRLKSMPPDLGHLTCLQTLTCF

VAGSCSGCSDLGELRQLDLGGRLELRKLENVTKADAKAANLGKKEKLTELSLRWTGQKYKEAQSNNHKEVLEGLT

PHEGLKVLSILHCGSSTCPTWMNKLRDMVKLVLDGCKNLEKLPPLWQLPALEVLCLEGLDGLNCLFNCDIYTSFT

FCRLKELTLASMRNFETWWDTNEVKGEELIFPEVEKLIIKSCPRLTALPKASNVISELSGGVSTVCHSAFPALKE

MELYGLDIFQKWEAVDGTPREEVTFPQLYKLDIRRCPELTTLPEAPKLRDLNIYEVNQQISLQAASRYITSLSSL

HLHLSTDDTETAPVAKQQDSSELVIEDEKWNHKSPLELMDLTGCNLLFSYPSALALWTCFVQLLDLNIWEVDALV

DWPEEVFQGLVSLRKLHILQCKNLTGLTQARGQSTLAPSELLPRLESLQIRRCYSFVEVPNLPTSLKLLQITDCH

DLRSIIFNQQQDTTMLVSAESFAQPDKSSLISGSTSETNDRVLPRLESLVIEYCNRLKVLHLPPSIKKLDIVRCE

KLQSLSGKLDAVRALNISYCGSLKSLESCLGELPSLQHLRLVNCPGLVSLPKGPQAYSSLTSLEIRYCSGINLLP

PSLQQRLDDIENKELDACYEGNLQFLNRVRFSGKSFERGV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	156	462	2.3e-70
NB-ARC [Pfam fs]	175	462	5.2e-71
LRR [Pfam ls]	597	619	0.48

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	597	619	0.015
LRR [sensitive, ls]	597	619	0.48
LRR [sensitive, ls]	620	640	0.47
LRR [sensitive, ls]	620	640	15
LRR [sensitive, ls]	644	667	1.2
LRR [sensitive, ls]	644	667	38
LRR [sensitive, ls]	777	799	0.31
LRR [sensitive, ls]	777	799	9.7
LRR [sensitive, ls]	927	949	0.33
LRR [sensitive, ls]	927	949	10
LRR [sensitive, ls]	1094	1117	1
LRR [sensitive, ls]	1094	1117	32
LRR [sensitive, ls]	1170	1195	1.1
LRR [sensitive, ls]	1170	1195	35
LRR [sensitive, ls]	1211	1234	0.53
LRR [sensitive, ls]	1211	1234	17
LRR [sensitive, ls]	1235	1258	0.59
LRR [sensitive, ls]	1235	1258	19
LRR [sensitive, ls]	1259	1279	0.92
LRR [sensitive, ls]	1259	1279	29

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	2	692	7e-40
RPM1 [A. thaliana]	16	875	5e-48
Pi-ta [Oryza sativa]	26	676	1e-24
I2 [L. esculentum]	35	1250	1e-108
Pib [Oryza sativa].	175	865	1e-35
Xa1 [Oryza sativa]	175	1310	4e-80
M [L. usitatissimum]	178	459	2e-14
RPS2 [A. thaliana]	180	874	2e-31
N [N. glutinosa]	181	976	2e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6670.m00167

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)