Report for 6680.m00142

 > 6680.m00142, length: 962, copies: 1 

MWRRRRGGGGGGGGGGVAVAVALAVMLVVGAAAGETAASDAAAMRAVARALGADKALGWSTGDPCSSPRAWAGVT

CDSAGRVTAVQVGNRSLTGRLAPEVRNLTALARLELFDNSISGELPSLAGLSSLQYLLVHNNGFTRIPPDFFKGL

TALAAVSLDNNPFDPWPLPADLADCTSLTNFSANTANVTGALPDFFGTALPSLQRLSLAFNKMSGPVPASLATAP

LQALWLNNQIGENQFNGSISFISNMTSLQELWLHSNDFTGPLPDFSGLASLSDLELRDNQLTGPVPDSLLKLGSL

TKVTLTNNLLQGPTPKFADKVKADVVPTTERFCLSTPGQPCDPRVNLLLEVAAEFQYPAKLADNWKGNDPCDGYI

GVGCDAGNITVLNFARMGFSGSISPAIGKITTLQKLILADNNITGTVPKEVAALPALTEVDLSNNNLYGKLPTFA

AKNVLVKANGNPNIGKDAPAPSGSGGSGGSNAPDGGNGGDGSNGSPSSSSAGIIAGSVVGAIAGVGLLAALGFYC

YKRKQKPFGRVQSPHAMVVHPRHSGSDPDMVKITVAGGNVNGGAAASETYSQASSGPRDIHVVETGNMVISIQVL

RNVTNNFSDENVLGRGGFGTVYKGELHDGTKIAVKRMEAGVMGNKGLNEFKSEIAVLTKVRHRNLVSLLGYCLDG

NERILVYEYMPQGTLSQHLFEWKEHNLRPLEWKKRLSIALDVARGVEYLHSLAQQTFIHRDLKPSNILLGDDMKA

KVADFGLVRLAPADGKCVSVETRLAGTFGYLAPEYAVTGRVTTKADVFSFGVILMELITGRKALDETQPEDSMHL

VTWFRRMQLSKDTFQKAIDPTIDLTEETLASVSTVAELAGHCCAREPHQRPDMGHAVNVLSTLSDVWKPSDPDSD

DSYGIDLDMTLPQALKKWQAFEDSSHFDGATSSFLASLDNTQTSIPTRPPGFAESFTSADGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	105	127	1.2
LRR [Pfam fs]	128	151	1.4e-05
LRR [Pfam ls]	128	151	0.00022
LRR [Pfam ls]	202	225	7.4
LRR [Pfam ls]	252	274	0.17
LRR [Pfam ls]	275	298	0.42
LRR [Pfam ls]	407	430	0.31
LRR [Pfam ls]	431	453	7.6
Ser/Thr pkinase [Pfam fs]	607	883	2.2e-53
Ser/Thr pkinase [Pfam ls]	607	887	5.8e-53

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	105	127	0.039
LRR [sensitive, ls]	105	127	1.2
LRR [sensitive, ls]	128	151	7e-06
LRR [sensitive, ls]	128	151	0.00022
LRR [sensitive, ls]	202	225	0.24
LRR [sensitive, ls]	202	225	7.4
LRR [sensitive, ls]	252	274	0.0053
LRR [sensitive, ls]	252	274	0.17
LRR [sensitive, ls]	275	298	0.014
LRR [sensitive, ls]	275	298	0.42
LRR [sensitive, ls]	299	322	0.97
LRR [sensitive, ls]	299	322	30
LRR [sensitive, ls]	383	406	1.2
LRR [sensitive, ls]	383	406	37
LRR [sensitive, ls]	407	430	0.01
LRR [sensitive, ls]	407	430	0.31
LRR [sensitive, ls]	431	453	0.24
LRR [sensitive, ls]	431	453	7.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	34	452	3e-28
Cf-9 [L. pimpinellifolium]	55	454	1e-10
FLS2 [A.thaliana]	71	447	6e-31
CLV2 [A. thaliana]	73	446	4e-11
FLS2 [A.thaliana]	78	447	1e-26
CLV2 [A. thaliana]	81	444	2e-13
CLV2 [A. thaliana]	81	343	3e-12
Xa21 [O. sativa]	81	694	6e-32
FLS2 [A.thaliana]	82	463	3e-28
Cf-9 [L. pimpinellifolium]	85	518	3e-14
Cf-9 [L. pimpinellifolium]	87	484	2e-13
CLV2 [A. thaliana]	89	447	1e-16
CLV2 [A. thaliana]	89	447	3e-15
FLS2 [A.thaliana]	89	341	7e-19
FLS2 [A.thaliana]	92	452	7e-26
Cf-9 [L. pimpinellifolium]	104	502	1e-15
Cf-9 [L. pimpinellifolium]	106	466	7e-21
FLS2 [A.thaliana]	237	458	1e-14
Rpg1 [Hordeum vulgare]	596	891	1e-35
Rpg1 [Hordeum vulgare]	596	893	3e-28
Pto [L. esculentum]	597	879	3e-51
FLS2 [A.thaliana]	600	888	2e-37

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	12	34	in -> out
putative TM domain	503	525	out -> in

Report for 6680.m00142

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)