Report for 6722.m00188

 > 6722.m00188, length: 753, copies: 1 

MGKPSSSWFRAASGSGMASVGFTGVVAMLLMATAFLGVTADTSSDDVTALNTFYTSLNSPSQLTNWVAQNGDPCG

QSWLGITCSGSRVITIKLPGMGLKGTLGYNMNVMTALVELDASNNNLGGGDIPYNLPPNLERLNLENNSFTGTLP

YSISQMASLKYLNLGHNQLSSINVMFNQLTNLATLDLSDNTFSGTLPDSFSNLTSLTMLHLQDNRFTGTIDVLSD

LPLTDLNVQNNQLSGAIPDKLKGISNLQISGNSFSNSPVSPAPSSPPSTTSQSPPRQPSTRNPRNRNRNPPIGSN

GDNGGNGDGSGGDGGGRSSKIGGGAVAGIVISLVVLGAMVGFFVFKRKSTRHQHGGDPEKNEPLTLRPIASGKFN

QLRTISIISPTAKEGLQKTVSMNLKPPSKIDLHKSFDENDLTNKPVLAKNVDLSSIRATAYTVADLQMATESFSA

DNLIGEGSFGRVYRAEISDESDHKVLAVKKINVSAFPSKPSDFFIDLVAKISKLNHPNLSELDGYCLEHGQYLLA

YEFYRNGSLHDFLHLSDGYSKPLSWNSRVKIALGSARALEYMHETCSPSIIHKNFKSSNILLDNELNPHVSDCGF

AELIPNQELQESDENSGYRAPEVTMSGQYSQKSDVYSFGVVMLELLTGRKAFDRSQPWPQQSLVRWASPQLHDID

ALDQMVDPALEGLYPAKSLSRFADAIALCVQPEPEFRPPMSEVVQSLVRLVQRSSMGSVLSGGESISRRYDNSGD

YTF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	111	132	2.6
LRR [Pfam ls]	134	157	0.13
LRR [Pfam ls]	158	180	0.021
LRR [Pfam ls]	181	204	0.0016
LRR [Pfam ls]	205	227	0.17
Ser/Thr pkinase [Pfam fs]	448	660	1.6e-35
Ser/Thr pkinase [Pfam ls]	448	724	1.6e-35

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	111	132	0.082
LRR [sensitive, ls]	111	132	2.6
LRR [sensitive, ls]	134	157	0.0043
LRR [sensitive, ls]	134	157	0.13
LRR [sensitive, ls]	158	180	0.00066
LRR [sensitive, ls]	158	180	0.021
LRR [sensitive, ls]	181	204	5.2e-05
LRR [sensitive, ls]	181	204	0.0016
LRR [sensitive, ls]	205	227	0.0053
LRR [sensitive, ls]	205	227	0.17
LRR [sensitive, ls]	248	275	3.1
LRR [sensitive, ls]	248	275	98

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	27	263	6e-16
FLS2 [A.thaliana]	28	270	2e-13
CLV2 [A. thaliana]	82	260	3e-12
Cf-9 [L. pimpinellifolium]	86	262	7e-12
FLS2 [A.thaliana]	86	262	2e-14
Xa21 [O. sativa]	86	539	2e-22
FLS2 [A.thaliana]	89	266	4e-13
FLS2 [A.thaliana]	95	275	2e-11
FLS2 [A.thaliana]	97	725	1e-43
Cf-9 [L. pimpinellifolium]	109	261	2e-12
FLS2 [A.thaliana]	109	253	1e-14
CLV2 [A. thaliana]	112	261	2e-14
FLS2 [A.thaliana]	112	254	2e-12
Rpg1 [Hordeum vulgare]	427	734	2e-19
Pto [L. esculentum]	429	722	1e-40
Rpg1 [Hordeum vulgare]	436	734	2e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	15	37	out -> in
putative TM domain	323	345	in -> out

Report for 6722.m00188

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)