Report for 6727.m00220

 > 6727.m00220, length: 774, copies: 1 

MESVVVTAAEGAVKTLLGKLGSFLSQEPRLLGGVRGELQYIKDELESMNAFLQNLAATSSHSVQVKIWMKQVREM

AYDAEDCIDEFQHHFGGYCGNGIVGFIYRMKHLMYTLKVRHRIVMQVQELKVRARDVSDRYARYSGANAIVDASD

SKNTTTSISTCLSLDPRQVIGFIQDDLLVGINNRRDRVLTYLRVDSDQELRVISIFGFGGLGKTTLAKAIYDSPQ

VKNGQFHCQAFVTVSQKIDLKALLRDMLGQLIPPASDQHVSSDIEDEHLKAIEVWDVKRLGDKLRSLFLMIFESK

ELFLRRLFGQLHECPQNIQKVSESVLKKCGGMPLAINSIAGLLACRPVKSLEEMQNLQNSLGSEMDSFSTMEKIK

QILLLSYNDLPYHLKTCFLYFSIFPEDYKIKRKNVVRQWVAEGFVSDKRGQSAEQVAESYFAEFINRSIVQPLDI

SDSGKVKTCRIHDIMLEVIVEMSVEQNFISLMGDQHTMISYDKVRRLSLHGHGAYNLSTSLELSHIRSLSSFGDM

PRALRFDRARLLRVLDLESCEFLRNRQHHHICALFHLKYLSLRRAHNIDRLPRKIKKLQSLETLDLRGKGIDKLP

ASFIELENLVHFRSGSTYLPHGFGRMKSILTLGLIEISDDTSWRIQEIGCLMQLEKLCIWSRDGMNKENWESLLT

VIENLSRRLLSLSIETDRRTCSLPLDFSSSPPLLLRSLLLYGSLEALPSWMASLDNLVKLTLGGTKLEEDDIQIL

QKLPRLFSLRLWFAFAVEKFVVAP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	163	425	1.4e-28
NB-ARC [Pfam fs]	165	256	1.2e-13
NB-ARC [Pfam fs]	314	425	8.5e-31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	561	584	0.66
LRR [sensitive, ls]	561	584	21
LRR [sensitive, ls]	585	607	1.6
LRR [sensitive, ls]	585	607	49
LRR [sensitive, ls]	731	754	0.27
LRR [sensitive, ls]	731	754	8.6

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	6	657	3e-66
RPM1 [A. thaliana]	9	765	3e-60
Mla1 [Hordeum vulgare].	11	750	1e-85
I2 [L. esculentum]	38	609	2e-28
Pib [Oryza sativa].	48	256	1e-14
Xa1 [Oryza sativa]	113	659	3e-19
RPS2 [A. thaliana]	178	771	5e-19
Pib [Oryza sativa].	320	756	2e-56

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6727.m00220

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)