Report for 6766.m00143

 > 6766.m00143, length: 1284, copies: 1 

MASSPAAAAAAAATATGFYGKAVATPVISYILNKAFTYLVNYWRTEDMESVKAELLKMLPHVQAVFDAVDWDNIK

EQSAALDAWLWQLRDAVEEAEDSLDELAYHRLKEEVKARDEQETSGSVSKLKGKLIRKLTKHVPKNGMLKRLKES

VEGLHKAIAGVKDFMGFVNKVGVVNHFMDYELKMKGKQFETSSRSTAIEVFGLEKEKDIMIKWLTEPTGNDPADT

NLRIFTIVGHGGFGKTTLAQLIYNEKKVQICFDICIWVSVSSHFDAPSITKSIIEAVSKKTPPANTLEALHAILE

DRLISKRFLLILDNVWNDNDMNEWEKLLAPLRIGGTGSIILLTTRMKSVGDMAGYALGLKVQHLKLDGLLEKDIL

MLFNKHAFRGLSLDCCKNLHPLGEQIVKKISGCPLAAKVIGAHLRDNISYMYWNKILQEDLQNLQLGMDGVMKVL

RLSYHHLPANLQLCFRYCSIFPQGYRFGKKELVEMWLGSGMILQTTDETKTLEDIGGQCLDQLTRKSFFEFTSKE

RDGVVLEEHYAMHDVLHDLAQVVSSGECLRIGGIRSMKIAKTVRHLSVKIVDSAHLKELFHLNNLRSLVIEFVGD

DPSMNYSITFDEILKSFRSLRLLCVTAKCWFDMPGAVSKLIHLRYISLLSTKRSFLVSMHKRFTLYHLETLKIME

YSEGKMLKLNGLSNLVCLRNLHVPYDTISSIPRIGKLTCLEYLNAFSVQKRIGHTVCELKNLSQLHHLRLRDIQN

VGSCKEVLDANLKDKKHMRTFSLHWSSHEVIAENVSDLVLDYLQPHSDLEELDIIGFSGTRLPFWITDSYLVNIV

SLNIINCCKIEHVPSLASLCSLKNLFLQDLSLLASMGCMLHECDKIPVGCSHSFQECPSSIDMSEGMVDVESEGV

SFPPHLSTLTIRGCPQLMKLPTLPSMLKQLKIEKSGLMLLPKMYQKHNDTEGSFPCPNESQLTNVLIEYCPNLNS

LLHCFLGQNVTLTSLRELRINQCEKLEYLPLNGLMELVNLQILEVSDCSMLKKSGMEVKLLPSSLEQLSIKSCGE

LANILIDLLAGLEALTFLELANCSHLISLPTVKTFETLTALKELRLYGCPELSSLGGLQCLKSLRLLIIRGCCSL

TKISSLPPPLQCWSSQDDSTENSLKLGTLFIDDHSLLFVEPLRSVRFTRRLSLLDDPIMTSLPEQWLLQNRTTLS

ILWLWNVKSLQCLPSSMKDLCHLQSFTLFNAPLVNSLPDMPASLKDLIIDCCQIALAERCRKGGCDWSKIAHVTL

LKINGNEPL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	184	497	1.2e-58
NB-ARC [Pfam ls]	184	497	8.6e-59
LRR [Pfam ls]	1090	1112	1.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	692	713	1.2
LRR [sensitive, ls]	692	713	27
LRR [sensitive, ls]	823	845	0.94
LRR [sensitive, ls]	823	845	22
LRR [sensitive, ls]	905	931	1.6
LRR [sensitive, ls]	905	931	37
LRR [sensitive, ls]	989	1013	0.38
LRR [sensitive, ls]	989	1013	8.9
LRR [sensitive, ls]	1014	1037	2.2
LRR [sensitive, ls]	1014	1037	50
LRR [sensitive, ls]	1039	1063	1.2
LRR [sensitive, ls]	1039	1063	29
LRR [sensitive, ls]	1064	1086	1.2
LRR [sensitive, ls]	1064	1086	28
LRR [sensitive, ls]	1090	1112	0.057
LRR [sensitive, ls]	1090	1112	1.3
LRR [sensitive, ls]	1113	1136	0.55
LRR [sensitive, ls]	1113	1136	13
LRR [sensitive, ls]	1222	1245	4.2
LRR [sensitive, ls]	1222	1245	98

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	20	1279	1e-100
Mla1 [Hordeum vulgare].	46	852	3e-26
RPS2 [A. thaliana]	182	921	6e-23
Pib [Oryza sativa].	199	593	2e-20
Pi-ta [Oryza sativa]	199	745	1e-22
N [N. glutinosa]	227	1045	5e-11
Xa1 [Oryza sativa]	227	1273	1e-103
RPP5 [A. thaliana]	228	1146	4e-14
RPM1 [A. thaliana]	229	815	2e-32
Xa1 [Oryza sativa]	668	1280	2e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6766.m00143

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)