Report for 6779.m00161

 > 6779.m00161, length: 1218, copies: 1 

MESMNSFLEHLARTAPPDGSHDEQVQTWMKQVRYLAHDYSNCIDHYLQRGDPAIHRARGGLRGYFWWAYWFVLEK

VAQHKAAARLCELKERASDVDKRRMSDIVSEGLTKAGVQFKHTVRINLPSVHYPSDYLGPNEVLCYILRVCTIQK

DNKDPNYVDNGIVRFKAWRQREQMIRIVSNKFEEHVPRRIQDLISKIEDMESKINVKTVGSEKTRQTYEEDSMNE

GTDGGSKTIEGNAGGGRNTAGEKGGVTKSEEKGGGSKTVEQRGGSTETQEKTGGGKTTEEAVDTECSLVLQTDKP

LCVLYLALLSEEKWKQAKDVLALEEQTLINNTAKEFKQHMEGDMKTPTIKLLDTQYQAILWEVFLTSNPEEATTA

ASATSSSTNRRAAPATLGDDQTKEIMEQIKGIIHLVKQDILEEIQAIKSHGPREQKLGHDQVVSAIQDAKNKITQ

IGLKIKEQMIIKGMIDRINLYLKDGDTLFIIVEDENRRHELKWEDIMNALELLKCAKGSAVIVTTKNTQKASEFC

YPPSEPITYSLVGLYHDIVLKLTQQLVNNEDDNNNSQILRDILDKCHPHEFCMKMFARALYANPNRSNKELGRLR

DTLQISENSLDTKAKKIFKFSYRDLHREHKTCLLYLAIFPQGTNIRRSTLIARWLTEGLITKEDWPTAVRHAERC

FDALIDRCLVSPGDISAKGEFKSCMVGDLIHGGLRLRASDSIDMFVKKLHNYSSQLSLLKLLDLQGCQCFDKSSY

LKAICNNIALLKYLSLRRTNITHLPSEINNLHDLEILDIRQTKVPEKETKLVLLLKLRRLLAGYTDPSPSFNDKG

TNNRTFSCVRIPSKIEKMENMEVLSNVTASWYGYELKDIRKLWQLRKLGVVIKDKDRHLQNLFQAVGDLNECLQS

ISITITDTRSETTSKDSKILSDELYNRLIHPPKLLESVSINGSTNLRILSLLAKVSGSDNDAYNDPSLTFKKEMF

EHLKCLLVDGDNLKCMTDIIFEEGAAVELEKIVLSSTNVRSLRGVGRLPMLKELELKGNKSLFSFHGGVPLSGDG

GAHQESNEPVSHSKDGAAPQKNNDVHVSPSEDGAAPHTSTDGQVPPSAEGPAPQINTEVKITFKKGEFQQLKYFL

FEDSKIVDIIIENGAVPELERIILLLTRKESQLTVSGSRAKLKEIEVKGDKSILLSLLKNANKIEKVILCVTSLN

RDEAGRLAKKQNICCLVL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	374	665	2.5e-05
NB-ARC [Pfam fs]	617	665	1.2e-08
LRR [Pfam ls]	760	782	0.73

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	760	782	0.031
LRR [sensitive, ls]	760	782	0.73
LRR [sensitive, ls]	1003	1024	1.4
LRR [sensitive, ls]	1003	1024	32

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	464	1031	3e-12
Mla1 [Hordeum vulgare].	464	1004	2e-15
Pi-ta [Oryza sativa]	464	878	1e-11
Pib [Oryza sativa].	472	1031	4e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6779.m00161

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)