Report for 6786.m00169

 > 6786.m00169, length: 2631, copies: 1 

MERHGCSRHRHCSFVLLIVVVVVAYLLVGVVPALQASVIAEDDGRALMQFQSLITEDPYGALATWGGSSGSNHSA

SPATPCGWCGVTCGVRGRSRGRVTALDLRGLGLGGAIVAQSSLSSLTYLRWLDLSQNRLCGGVPTPLPLSLEYLN

LSCNALQGTVSSELGSLRRLRVLVLDTNNLTGGIPASLGNLTSLTDLALTGNHLSSHIPSALGNLRALTSLYLND

NMLEGSIPLSVFNLLSVALSRQSIHHQTRARKEGSNQILSLILLAEISLQVDAMEKQAGGFEKMLEGIQNAIGAV

AVKQDETQAVVLQMDKAMASWRPQVDAAVKGLQSEMGELKKQVEILEKLRGELGNSSNMLQAGAISTRKQGDDND

QRPPLLPTPESFVASTLAGDSGSNGHRVAINNRGKATGVIIPPVPPQVTGTTNSPFSHRFACDSLHRDEVGGSED

RGYNHRVPKLDFPQFDGVDPQNWRMRCEHYFGVYGTHPILWVRVATIYFTGRAASWLRSSKAHLRFSEWSNFCLA

VDRKFDRDRHQMLIRQIEQIKQTGTVEEFYERFDDVTNQLLAFDPMYNQLTIVHRFTEGLRFDIRHAVMMQRPRD

LETALAIACLQEEWTETQKPKEFRKLGDHVLRIKGAYPLPLPPSKVSESSAGAGKSSSEPVKTTAIADRMRALKA

HRRAQGLCYLCAEKWSLSHKCSSSVQLNAVQEVFALLQQNDSDSGDSSGEDTEPHSLFSLSVHAIQGTTTAQTMR

QTMRLQGIIQGYDILILVDSGSSCSFISLSVMPQLSNLIQLPVSFQVKVANGQMLSCETELANVSWSVQGHHFCS

ALKVLPLQSYDMILGMDWLERYSPMDIDWQQKTIRFTLDGQLITLCGVVPSVSANPVLSVLELHQLYQSGSIEEP

QGLPPVREYDHTIPLIPGAQPVNVRPYRYTPLQKDEIERQVADILDRVPVATDEDKIVAVRNWITPTSVKELRSF

LGLSGYYHKFVRNYGIICKPLTNLLRKGQLFVWTSVHEAFVTLKYALISAPALAMPDFQKQFVVETDASDKGIGA

VLIHKALGPRTQGLSTYEKESLAIILAVEHWRSYLQHDEFVIRTDHRSLAFLDNQRLSTTWQQKALTKLLGLRYR

IVYKKGLENGAADALSRQSPVDMVEILALSVSIPAWLQEKRIWIGNNKSLQQQILANLHTAAVGGHSGLRQSVHN

FVQACDVCQRAKSEHIKLPGLLQPLEVPDHAWQWKHWLGMAQFWYNSSYHSAIAMTPFEALFGHKPSYFGLTITA

IDAPMSLASWLTDRNNMSALIHHHLLRAQQRMKHQADLHRSERIFTVGDWVFLKLQPYVQQSVMTRANRKLSFKF

YGPFQVLQRVGSVAYKLDLPSTSMIHPVVHVSQLKKALAPAEKVQASLPTLDSEFGPLAVPHRILERRLRQRGAK

LIEQVQVEWKGTSSPAITWENLEELRHKFPAAPAWGQAGSQGGRNVTPEHSSSDSGAEGRIKSSGPSTTARPRRE

RRDNPRVKGKDWILSLILLAEISVRNKHLVMQFNNLTGTLPPCAGNRLPRLKVLSVDRNQLHGAIPVSLCNSSKL

EVIQMMKNSFSGVIPDCLGAHLQNLWELTLDDNQLEANSDSDWRFLDSLTNCSNLKVIGLAGNKLRGLLPGSIAN

LSTSMEFLSIYNNMIHGQIPQGIGNLVNLDSIYMHLNNLAGTIPDSIGKLKKLSNLYLYDNNLSGQIPATIGNLT

MLSRLSLNENMLTGSIPSSLGNCPLETLELQNNRLTGPIPKEVLQISTLSTSANFQRNMLTGSLPSEVGDLKNLQ

TLDVSGNRLTGEIPASLGNCQILQYCIMKGNFLQGEIPSSIGQLRGLLVLDLSGNNLSGCIPDLLSNMKGIERLD

ISFNNFEGEVPKRGIFLNAQCLFGRGDHWLVWGNSRKGEHALLLISDQHVRVSYTELVTSTNGFASENLVGVGSF

GSVYKGTMMSNEEEVVVAVKVLNLQQRGASQSFVAECETLRCARHRNLVKILTVCSSIDSRGLDFKAIVFDFLPN

GNLHQWLHPREHGNQTGLSLIQRINIAIDVASALEYLHQYRPAPIVHCDFKPSNILLDNDMVAHVGDFGLARFVD

HGQHSLPDISSGWATIRGTIGYAAPGQIRWTVKHWTRKPTTALKMARNEPTLQILVEPDRRTRQTDPTPLRSRPA

RSPETPWPRRSPGVVRLAAASRALLLALSLLSRLLFRPYDTSASLHPPCLLPSPSPNSTTTAANSIASLAVWDGV

HFLRAAECGYEYEQSFAFLPLLPASLNLLARSVLAPLVPVLGYRAVLVVSGYVLNNVAFVAAAAYFYRLSVLILK

SPSAAYRASVLFCFNPASVFYSSLYSESLYALFSLGGVFYVFTGANTIAMIMLALSGSARSNGALNAGYFCFQAL

LHAYDAAFQKKQPMLAVQVLVTGFLRSVFVFIPFFAFQAYGYLNICLHGNMEELRPWCKSKVPLLYGFIQSHYWG

VGFLRYFQVKQLPNFLLASPVLSLAVYSIVHYTKMLRQLFESNSIHELIVATVEGRSIEAYKSSDVDTVLKSKVS

TNVTNKAQGNAVAKRRKSVATETDSNDQIIEVNKDVCPIVVLPFILHLAFMTFTAFFVMHVQVTRCLGRVFAVMD

RESAWG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	145	168	0.018
LRR [Pfam ls]	169	192	0.054
LRR [Pfam ls]	193	216	0.19
LRR [Pfam ls]	217	241	0.043
LRR [Pfam ls]	1629	1652	0.067
LRR [Pfam ls]	1654	1677	2.8
LRR [Pfam ls]	1702	1725	0.024
LRR [Pfam ls]	1749	1773	4.7
LRR [Pfam ls]	1798	1821	0.0015
LRR [Pfam ls]	1846	1869	0.008
Ser/Thr pkinase [Pfam fs]	1939	2125	2.4e-34
Ser/Thr pkinase [Pfam ls]	1939	2211	1.3e-21

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	97	122	2.8
LRR [sensitive, ls]	97	122	62
LRR [sensitive, ls]	123	143	0.31
LRR [sensitive, ls]	123	143	7
LRR [sensitive, ls]	145	168	0.00082
LRR [sensitive, ls]	145	168	0.018
LRR [sensitive, ls]	169	192	0.0024
LRR [sensitive, ls]	169	192	0.054
LRR [sensitive, ls]	193	216	0.0084
LRR [sensitive, ls]	193	216	0.19
LRR [sensitive, ls]	217	241	0.0019
LRR [sensitive, ls]	217	241	0.043
Retrotransposon gag protein [fs]	493	587	4.8e-16
Retrotransposon gag protein [ls]	493	587	1.2e-14
Integrase core domain [fs]	1234	1262	0.0014
LRR [sensitive, ls]	1525	1549	3.7
LRR [sensitive, ls]	1525	1549	83
LRR [sensitive, ls]	1550	1573	0.39
LRR [sensitive, ls]	1550	1573	8.8
LRR [sensitive, ls]	1574	1598	1.6
LRR [sensitive, ls]	1574	1598	36
LRR [sensitive, ls]	1599	1625	0.72
LRR [sensitive, ls]	1599	1625	16
LRR [sensitive, ls]	1629	1652	0.003
LRR [sensitive, ls]	1629	1652	0.067
LRR [sensitive, ls]	1654	1677	0.12
LRR [sensitive, ls]	1654	1677	2.8
LRR [sensitive, ls]	1678	1701	0.34
LRR [sensitive, ls]	1678	1701	7.6
LRR [sensitive, ls]	1702	1725	0.0011
LRR [sensitive, ls]	1702	1725	0.024
LRR [sensitive, ls]	1726	1746	0.67
LRR [sensitive, ls]	1726	1746	15
LRR [sensitive, ls]	1749	1773	0.21
LRR [sensitive, ls]	1749	1773	4.7
LRR [sensitive, ls]	1798	1821	6.5e-05
LRR [sensitive, ls]	1798	1821	0.0015
LRR [sensitive, ls]	1846	1869	0.00036
LRR [sensitive, ls]	1846	1869	0.008
LRR [sensitive, ls]	1870	1894	0.82
LRR [sensitive, ls]	1870	1894	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	15	256	5e-15
Xa21 [O. sativa]	15	273	2e-25
FLS2 [A.thaliana]	19	242	3e-21
CLV2 [A. thaliana]	43	274	1e-12
CLV2 [A. thaliana]	97	244	5e-12
Xa21 [O. sativa]	97	250	3e-14
FLS2 [A.thaliana]	98	375	1e-14
FLS2 [A.thaliana]	98	244	4e-14
Cf-9 [L. pimpinellifolium]	101	236	1e-11
FLS2 [A.thaliana]	101	253	3e-16
Xa21 [O. sativa]	101	239	2e-16
FLS2 [A.thaliana]	116	242	1e-13
FLS2 [A.thaliana]	116	246	2e-13
FLS2 [A.thaliana]	118	251	1e-14
Xa21 [O. sativa]	1525	1887	2e-46
Cf-9 [L. pimpinellifolium]	1527	1896	1e-33
Cf-9 [L. pimpinellifolium]	1527	1886	2e-29
CLV2 [A. thaliana]	1527	1883	3e-32
CLV2 [A. thaliana]	1529	1885	6e-39
CLV2 [A. thaliana]	1529	1863	1e-15
CLV2 [A. thaliana]	1529	1746	3e-13
FLS2 [A.thaliana]	1529	1902	8e-52
Xa21 [O. sativa]	1529	1886	9e-46
FLS2 [A.thaliana]	1533	1887	1e-51
CLV2 [A. thaliana]	1534	1888	1e-28
FLS2 [A.thaliana]	1534	2125	3e-79
FLS2 [A.thaliana]	1534	1886	1e-49
FLS2 [A.thaliana]	1534	1887	1e-45
Xa21 [O. sativa]	1534	2050	1e-122
FLS2 [A.thaliana]	1536	1887	5e-48
CLV2 [A. thaliana]	1549	1886	4e-34
FLS2 [A.thaliana]	1616	1894	7e-37
Xa21 [O. sativa]	1635	1897	3e-31
Cf-9 [L. pimpinellifolium]	1647	1903	1e-13
Xa21 [O. sativa]	1658	1894	9e-31
CLV2 [A. thaliana]	1665	1888	2e-18
CLV2 [A. thaliana]	1688	1891	9e-18
Xa21 [O. sativa]	1702	1886	7e-23
Xa21 [O. sativa]	1729	1886	2e-23
Pto [L. esculentum]	1921	2125	2e-16
Rpg1 [Hordeum vulgare]	1936	2128	1e-18
Rpg1 [Hordeum vulgare]	1936	2190	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Retrotransposon gag protein	493	587	1.4e-14
Protein of unknown function (DUF409)	2184	2631	5.8e-90

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	324	353

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	13	35	in -> out
putative TM domain	2295	2317	out -> in
putative TM domain	2329	2351	in -> out
putative TM domain	2361	2383	out -> in
putative TM domain	2415	2437	in -> out
putative TM domain	2486	2505	out -> in
putative TM domain	2589	2611	in -> out

Report for 6786.m00169

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)