Report for 873.m00173

 > 873.m00173, length: 1278, copies: 1 

MPRRHDALRLLLLVVVVAAADAATEADALLAWKAGLQDGAAALSGWSRAAPVCAWRGVACDAAAGGARVTSLRLR

GAGLGGGLDALDFAALPALAELDLNGNNFTGAIPASISRLRSLASLDLGNNGFSDSIPPQLGDLSGLVDLRLYNN

NLVGAIPHQLSRLPKVAHFDLGANYLTDEDFAKFSPMPTVTFMSLYLNSFNGSFPEFILKSGNVTYLDLSQNTLF

GKIPDTLPEKLPNLRYLNLSINAFSGPIPASLGKLTKLQDLRMAANNLTGGVPEFLGSMPQLRILELGDNQLGGP

IPPVLGQLQMLQRLDIKNSGLSSTLPSQLGNLKNLIFFELSLNQLSGGLPPEFAGMRAMRYFGISTNNLTGEIPP

VLFTSWPELISFQVQNNSLTGKIPPELGKASKLNILYLFTNKFTGSIPAELGELENLTELDLSVNSLTGPIPSSF

GNLKQLTKLALFFNNLTGVIPPEIGNMTALQSLDVNTNSLHGELPATITALRSLQYLAVFDNHMSGTIPADLGKG

LALQHVSFTNNSFSGELPRHICDGFALDHLTANYNNFTGALPPCLKNCTALVRVRLEENHFTGDISEAFGVHPKL

VYLDVSGNKLTGELSSAWGQCINLTLLHLDGNRISGGIPAAFGSMTSLKDLNLAGNNLTGGIPPVLGNIRVFNLN

LSHNSFSGPIPASLSNNSKLQKVDFSGNMLDGTIPVAISKLDALILLDLSKNRLSGEIPSELGNLAQLQILLDLS

SNSLSGAIPPNLEKLITLQRLNLSHNELSGSIPAGFSRMSSLESVDFSYNRLTGSIPSGNVFQNASASAYVGNSG

LCGDVQGLTPCDISSTGSSSGHHKRVVIATVVSVVGVVLLLAVVTCIILLCRRRPREKKEVESNTNYSYESTIWE

KEGKFTFFDIVNATDNFNETFCIGKGGFGSVYRAELSSGQVVAVKRFHVADTGDIPDVNKKSFENEIKALTEVRH

RNIVKLHGFCTSGDYMYLVYEYLERGSLGKTLYGEEGKKKMDWGMRVKVVQGLAHALAYLHHDCNPAIVHRDITV

NNILLESDFEPRLCDFGTAKLLGGASTNWTSVAGSYGYMAPGKNERKKLRSDLFKIVLHIIVIHESTEVITICRT

LKDCHWEKELLKFRQVRHRTINTYRLRLFLAEFAYTMRVTEKCDVYSFGVVALEVMMGKHPGDLLTSLPAISSSE

EDDLLLKDILDQRLDAPTGQLAEEVVFIVRIALGCTRVNPESRPSMRSVAQEISAHTQAYLSEPFKLITISKLTD

YQK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	93	116	0.24
LRR [Pfam ls]	117	140	0.032
LRR [Pfam ls]	141	164	0.37
LRR [Pfam ls]	213	237	0.062
LRR [Pfam ls]	238	261	0.017
LRR [Pfam ls]	262	285	2.9
LRR [Pfam ls]	286	309	0.21
LRR [Pfam ls]	310	333	3.5
LRR [Pfam ls]	334	357	1.5
LRR [Pfam ls]	407	430	4.4
LRR [Pfam fs]	431	454	2.7e-05
LRR [Pfam ls]	431	454	0.00044
LRR [Pfam ls]	455	478	0.35
LRR [Pfam ls]	503	527	3.9
LRR [Pfam ls]	599	622	0.64
LRR [Pfam ls]	623	646	0.001
LRR [Pfam ls]	647	667	0.072
LRR [Pfam ls]	670	693	3.5
LRR [Pfam ls]	694	717	1.8
LRR [Pfam ls]	718	741	0.12
LRR [Pfam fs]	767	790	4.9e-05
LRR [Pfam ls]	767	790	0.00085
LRR [Pfam ls]	791	813	0.79
Ser/Thr pkinase [Pfam fs]	917	1091	1.9e-38
Ser/Thr pkinase [Pfam ls]	917	1259	1.4e-30
Ser/Thr pkinase [Pfam fs]	1165	1186	0.062

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	68	92	0.6
LRR [sensitive, ls]	68	92	14
LRR [sensitive, ls]	93	116	0.01
LRR [sensitive, ls]	93	116	0.24
LRR [sensitive, ls]	117	140	0.0014
LRR [sensitive, ls]	117	140	0.032
LRR [sensitive, ls]	141	164	0.016
LRR [sensitive, ls]	141	164	0.37
LRR [sensitive, ls]	165	188	1.9
LRR [sensitive, ls]	165	188	45
LRR [sensitive, ls]	213	237	0.0027
LRR [sensitive, ls]	213	237	0.062
LRR [sensitive, ls]	238	261	0.00073
LRR [sensitive, ls]	238	261	0.017
LRR [sensitive, ls]	262	285	0.12
LRR [sensitive, ls]	262	285	2.9
LRR [sensitive, ls]	286	309	0.0089
LRR [sensitive, ls]	286	309	0.21
LRR [sensitive, ls]	310	333	0.15
LRR [sensitive, ls]	310	333	3.5
LRR [sensitive, ls]	334	357	0.063
LRR [sensitive, ls]	334	357	1.5
LRR [sensitive, ls]	358	382	0.32
LRR [sensitive, ls]	358	382	7.4
LRR [sensitive, ls]	383	406	0.34
LRR [sensitive, ls]	383	406	7.9
LRR [sensitive, ls]	407	430	0.19
LRR [sensitive, ls]	407	430	4.4
LRR [sensitive, ls]	431	454	1.9e-05
LRR [sensitive, ls]	431	454	0.00044
LRR [sensitive, ls]	455	478	0.015
LRR [sensitive, ls]	455	478	0.35
LRR [sensitive, ls]	479	502	0.51
LRR [sensitive, ls]	479	502	12
LRR [sensitive, ls]	503	527	0.17
LRR [sensitive, ls]	503	527	3.9
LRR [sensitive, ls]	551	574	0.34
LRR [sensitive, ls]	551	574	7.9
LRR [sensitive, ls]	575	598	0.46
LRR [sensitive, ls]	575	598	11
LRR [sensitive, ls]	599	622	0.027
LRR [sensitive, ls]	599	622	0.64
LRR [sensitive, ls]	623	646	4.3e-05
LRR [sensitive, ls]	623	646	0.001
LRR [sensitive, ls]	647	667	0.0031
LRR [sensitive, ls]	647	667	0.072
LRR [sensitive, ls]	670	693	0.15
LRR [sensitive, ls]	670	693	3.5
LRR [sensitive, ls]	694	717	0.076
LRR [sensitive, ls]	694	717	1.8
LRR [sensitive, ls]	718	741	0.0049
LRR [sensitive, ls]	718	741	0.12
LRR [sensitive, ls]	742	766	3.6
LRR [sensitive, ls]	742	766	84
LRR [sensitive, ls]	767	790	3.6e-05
LRR [sensitive, ls]	767	790	0.00085
LRR [sensitive, ls]	791	813	0.034
LRR [sensitive, ls]	791	813	0.79

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	15	1104	1e-144
Xa21 [O. sativa]	21	555	1e-71
CLV2 [A. thaliana]	28	709	3e-63
Cf-9 [L. pimpinellifolium]	67	716	3e-46
CLV2 [A. thaliana]	86	427	4e-23
CLV2 [A. thaliana]	88	525	8e-36
Cf-9 [L. pimpinellifolium]	193	828	6e-65
Cf-9 [L. pimpinellifolium]	211	816	6e-56
Xa21 [O. sativa]	214	710	5e-71
FLS2 [A.thaliana]	215	840	2e-78
CLV2 [A. thaliana]	237	844	3e-60
CLV2 [A. thaliana]	334	811	5e-65
Xa21 [O. sativa]	335	1010	2e-97
CLV2 [A. thaliana]	411	831	1e-40
Xa21 [O. sativa]	455	808	1e-46
Pto [L. esculentum]	888	1126	4e-26
Rpg1 [Hordeum vulgare]	901	1254	2e-24
Rpg1 [Hordeum vulgare]	904	1123	3e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	853	875	out -> in

Report for 873.m00173

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)