Report for 905.m00133

 > 905.m00133, length: 1090, copies: 1 

MDMSSYLAVGGWFIQVIFDKYLSYQLQSWAADCGISHEMNRLRVALLRTQSVLHGAEVTPSLSYGSLPWMRELRD

VMYHAEDLLDKLEYNRLHHQMQESSSTESNSSPISAFMHSRFRNQGAQASGLEPHWDRSTRVKNQMVNLLERLEQ

VASGVSEALSLPRKPRHSRYSIMTSSVAHGEIFGRESEIQQLVSTLLSSQVDGDNPVSVASIVGVGGVGKTALAQ

HVYNNTRVAQYFDMRMWICVTDAFDESRITREMLESVSSSRFRHDSITNFNRLQVALRARLVSKRFLLVLDDVWS

NDKITLAIEHENWQKLLSPLKAAANGSKILLTTRSSMVAEMLQSAHITNLECLSDKDCWSLIKMIVFDDTNHLIN

SQLANIGSEIAKTLNGLPLAAKVVARQLKCKHTTDEWKQVLQRNAVWDEIMPIFQHSYENLPVHLQQCLAYCSIF

PKDWEFEAEQLILMWMAQGYVYPDGCRRMEDIGKQYVDELCSRSFFAIQKKQFVSYYVMPPVIHKLAKSVSAEEC

FRIGGDEQRRIPSSVRHLSIHLDSLSMLDETIPYMNLRTLIFFTSRMVAPINISIPQVVLDNLQSLRVLDLSPCK

IDRLPDSIRQCVHLRYLNISSTAINMLPEYLGKLYHLQVLNLSGCRLEKLPSSINNLVSLRHLTAANQILSTITD

IGSLRYLQRLPIFKVTSEETNSIIQLGYLQELRGSLHIRNLENIDAPDEAKEAMLCKKVNLTMLQLMWAPARDLV

NSDKEAEVLEYLQPHPNLKRLDIIGWMGVKAPSWLESKWLINLELIFLSGCNAWEQLPPLGQLPSVRTIWLQRLK

TVRQIGLEVYGNRSSHVAFQSLEELVLDDMQELNEWSWTGQEMMNLRNIVIKDCQKLKELPPLPPSLTELTIAKK

GFWVPYHHDVKMTQLTTVTTVSSLCIFNCPKLLARFSSPVTNGVVASFQSLRSLIVDHMRILTCPLLRERLEHIE

NLDIQDCSEITTFTADNEDVFLHLRSLQSLCISGCNNLQSLPSSLSSLESLDKLILWNCPELELLPDEQLPLSLR

KLEVALCNPVLKDRLRKECGIDWPKIAHIPWVEIDGEILQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	167	476	5.8e-67
NB-ARC [Pfam fs]	181	476	1.2e-66
LRR [Pfam ls]	613	635	7.8
LRR [Pfam ls]	636	658	0.003
LRR [Pfam ls]	1001	1024	0.19

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	590	612	0.34
LRR [sensitive, ls]	590	612	11
LRR [sensitive, ls]	613	635	0.25
LRR [sensitive, ls]	613	635	7.8
LRR [sensitive, ls]	636	658	9.7e-05
LRR [sensitive, ls]	636	658	0.003
LRR [sensitive, ls]	659	680	1.3
LRR [sensitive, ls]	659	680	42
LRR [sensitive, ls]	792	814	1.9
LRR [sensitive, ls]	792	814	61
LRR [sensitive, ls]	870	893	0.4
LRR [sensitive, ls]	870	893	12
LRR [sensitive, ls]	973	1000	1.1
LRR [sensitive, ls]	973	1000	36
LRR [sensitive, ls]	1001	1024	0.0062
LRR [sensitive, ls]	1001	1024	0.19
LRR [sensitive, ls]	1025	1046	1.4
LRR [sensitive, ls]	1025	1046	43

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	7	1057	1e-123
RPM1 [A. thaliana]	34	886	2e-47
Mla1 [Hordeum vulgare].	69	708	2e-36
Pi-ta [Oryza sativa]	69	640	4e-41
RPP5 [A. thaliana]	149	1069	1e-18
Pib [Oryza sativa].	166	668	4e-35
N [N. glutinosa]	182	1062	2e-14
RPS2 [A. thaliana]	182	886	8e-33
Xa1 [Oryza sativa]	182	1057	2e-97
I2 [L. esculentum]	824	1085	6e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 905.m00133

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)